Biobanking LIMS: Laboratory Software for Biobanks & Biorepositories

An Advanced LIMS for Biobanks and Biorepositories with Zero Upfront Cost

Secure, Flexible, Purpose-Built Laboratory Software for Biorepositories

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Streamline Workflows with Cloud-Based Biobanking LIMS Software

Biorepositories sit at the intersection of scientific discovery, donor privacy, and strict regulatory compliance — a demanding environment where manual processes and generic software simply cannot keep pace. Managing high-quality, fit-for-purpose biospecimens, associated metadata, and donor consent while protecting sample integrity and preventing unauthorized access requires a platform built specifically for biorepositories.

CloudLIMS is a cloud-based SaaS LIMS designed from the ground up for biorepositories of all sizes. It enables biorepositories to securely manage sample and donor data, enforce role-based access controls, meet regulatory compliance and quality standards, including ISO 20387:2018, HIPAA, EU GDPR, and 21 CFR Part 11, and generate the real-time reports that keep operations running smoothly. Because it is hosted entirely in the cloud, CloudLIMS eliminates the need for on-premise servers or dedicated IT staff — delivering enterprise-grade biorepository management with zero upfront infrastructure cost.

Watch BIRKA Biostorage's Digitization Journey with CloudLIMS
Birka

Sanguine Biosciences Transforms Biobanking with CloudLIMS | Customer Story
Sanguine

CloudLIMS: A Complete Biobanking LIMS Platform

CloudLIMS is a purpose-built, scalable, SaaS biobanking LIMS that evolves alongside your biorepository. Whether you are managing a small institutional collection or a large commercial biobank with thousands of specimens, CloudLIMS scales to support your data management, workflow automation, and compliance needs at every stage of growth. Cloud deployment means the platform is accessible from any location, any device, at any time — empowering distributed teams without the overhead of on-site infrastructure.

Measurable Benefits of Our Biobanking LIMS Software

CloudLIMS’s customers have achieved measurable improvements in efficiency, compliance, and data quality in the following ways:

  • Regulatory workflow automation — automate processes aligned to ISO 20387:2018, EU GDPR, HIPAA, 21 CFR Part 11, and ISBER Best Practices, reducing compliance burden and audit failure risk.
  • Configurable data model — adapt CloudLIMS to your specific biorepository requirements without costly custom software development.
  • End-to-end sample genealogy — track sample lineage, storage locations, freezer inventory, and collaborator shipments within a unified system.
  • Automated chain of custody (CoC) — digitally record every internal and external biospecimen transfer between custodians, satisfying audit trail requirements.
  • Role-based access controls — restrict data access to authorized personnel only, protecting Protected Health Information (PHI) and sensitive research data.
  • Study management — establish dynamic relationships between study attributes across modules and execute simple to complex queries.
  • Single Sign-On (SSO) — Sign in via Google, LinkedIn, or Okta to access CloudLIMS seamlessly without repeated logins, enhancing productivity, strengthening security, and simplifying authentication.
  • Test management — manage tests and results for both clinical and research purposes and produce compliance-ready reports.
  • Services and billing management — create service catalogs for sample purchase, storage, and testing, and generate professional invoices by utilizing CloudLIMS’ direct integration with QuickBooks.

Biobanking LIMS Case Studies

The University of Sheffield Automates its Biorepository Data Management Operations using CloudLIMS
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Steven Haynes

Core Facility Manager - Genomics and Biorepository
The University of Sheffield

Nova Medical School Ditches Spreadsheets & Chooses CloudLIMS to Digitize Their Biobanking Operations
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Saba Abdulghani

Ph.D Biobank Coordinator Comprehensive Health Research Centre NOVA Medical School New University of Lisbon Lisbon, Portugal

Achieve ISO 20387:2018 Standards with CloudLIMS’ Biospecimen Management Software

Centralize all internal and external documents — Standard Operating Procedures (SOPs), patient consent forms, quality records, and regulatory filings — within CloudLIMS. Track every document’s full revision history, assign documents for review and approval, and enforce access controls on confidential materials. Your biobank always operates from the latest approved procedures, with a complete audit trail to prove it.

Every movement of a biological material carries regulatory weight. CloudLIMS automatically records each custodian-to-custodian sample transfer — whether they are internal handoffs between departments or external shipments to collaborators — with timestamped, tamper-proof records.

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Freezer malfunctions are a leading cause of sample integrity loss. CloudLIMS maintains detailed records of every instrument involved in biorepository operations, including manufacturer details, model and serial numbers, calibration schedules, and maintenance history. Automated alerts ensure scheduled calibration and maintenance events are never missed, keeping your freezers — and your accreditation — in good standing.

Staff competency assurance is a non-negotiable element of ISO 20387 accreditation. CloudLIMS tracks past, current, and upcoming training for every staff member involved in biorepository activities, along with their qualifications and competency assessments. Automated reminders keep personnel on schedule, and training reports can be exported in PDF or Excel format for audit submissions.

Create aliquots and derivatives from any parent sample, with automatic deduction of parent sample quantities to keep inventory accurate. CloudLIMS tracks the complete lineage of every specimen — from original collection through every downstream fractionation event — providing the full traceability necessary for regulatory inspection. You can also scan the parent barcode and instantly find all aliquots or derivatives obtained from the parent sample.

Specimen Processing and Fractionation
Specimen Processing and Fractionation

Assign storage locations and log samples directly from the Samples module. Use graphical storage views to manage hundreds of thousands of specimens across hierarchical freezer configurations, and filter stored samples by status, location, or aliquot association for rapid, precise retrieval. Barcode-based auto-assignment minimizes placement errors and accelerates accessioning.

Specimen Storage and Traceability

Configure pre-defined workflows for each sample type and enforce staff to follow them and track deviations from SOPs. Automated workflow transitions reduce reliance on manual handoffs, closing the compliance gaps that arise when steps are done out of order.

Manage Sample Workflow

Support reproducible biomarker testing within and between laboratories. CloudLIMS enforces the use of validated test methods and enables cross-laboratory result comparison, providing the documentation needed to demonstrate test validity in regulatory submissions and research publications.

Biomarker Testing

Key Benefits of CloudLIMS - A Modern Biobanking LIMS System

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Regulatory Compliance Features

Follow ISO 20387, EU GDPR, HIPAA, 21 CFR Part 11, CAP-BAP, National Cancer Institute and ISBER Best Practices.

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Specimen Management

Store annotated sample data, track samples using barcodes, maintain Chain of Custody (CoC), manage all aspects of sample genealogy, and access a complete history of each sample from accessioning to their final disposal.

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Sample Storage Location Management

Create hierarchical storage units and view storage inventory graphically to manage storage locations of hundreds and thousands of samples, enabling quick and accurate tracking of samples. our LIMS software for biobanks can help assign samples to storage locations automatically based on barcodes.

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Patient & Sample Source Management

Manage diverse sample sources — human subjects, animals, plants, environmental materials — within a unified system. For human biobanks, CloudLIMS includes dedicated patient data management and consent tracking modules, ensuring that biospecimen use is always traceable back to informed, documented patient consent.

Why CloudLIMS for Commercial Biorepositories?

Biological specimens have become an indispensable resource in biomedical research, creating rapidly growing demand for commercially available biospecimens. Commercial biorepositories play a critical role in the research ecosystem — collecting, processing, and distributing annotated biospecimens to contract research organizations (CROs), biopharmaceutical companies, medical institutions, and healthcare organizations.

Operating commercially requires biorepositories to handle high sample volumes efficiently while managing complex client relationships, multi-service billing, and regulatory requirements across multiple jurisdictions. CloudLIMS supports both physical and virtual commercial biorepositories with fully configurable modules for services management, client portals, invoice generation, and regulatory compliance — designed to scale as your client base and collection grow.

Meet Regulatory Compliance and Quality Standards While Following Biorepository Best Practices with Ease

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Scientific Advisors

Dr. Jim Vaught
Dr. Jim Vaught
Ex Editor-in-Chief of Biopreservation and Biobanking
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Marianne K. Henderson
Marianne K. Henderson, M.S., CPC PMP
Division of Cancer Epidemiology and Genetics, NCI, NIH, DHHS
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Debra Leiolani Garcia
Debra Leiolani Garcia
A Biobanking Operations Expert
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Dr. Jim Vaught

Ex Editor-in-Chief of Biopreservation and Biobanking

Dr. Jim Vaught spent 14 years at the U.S. National Cancer Institute (NCI), most recently as the Chief of the Biorepositories and Biospecimen Research Branch (BBRB) in the Cancer Diagnosis Program. He has been working in the field of biorepository and biospecimen science for over 20 years.

In 1999, he was one of the founding members of the International Society for Biological & Environmental Repositories (ISBER). He serves on a number of biobank advisory groups including the Telethon-Italy Genetic Biobank Network; the Biobanques Network (France) Scientific Board; and the Provia Labs (Boston) Advisory Board.

He is a member of the Board of Directors of the National Disease Research Interchange. He is Senior Biobank Advisor to the Shanghai Clinical Research Center.

In addition to ISBER, Dr. Vaught is a member of the American Association for Cancer Research (AACR), the American Society for Pharmacology and Experimental Therapeutics, the European Society for Biopreservation & Biobanking, the American Association of Blood Banks, and the American Association for Clinical Chemistry.

He is the author of over 70 peer-reviewed articles and book chapters. From 2006 to 2012 he was Senior Editor for Biospecimens and Biorepositories for the AACR journal Cancer Epidemiology, Biomarkers and Prevention.

In 2012 he became Editor-in-Chief of Biopreservation and Biobanking, the official journal of ISBER. He is currently a Senior Research Fellow at the International Prevention Research Institute (Lyon), and a consultant for a number of international biobanking activities.

Dr. Vaught is the President of ISBER for 2015-2016.

Marianne K. Henderson, M.S., CPC PMP

Division of Cancer Epidemiology and Genetics, NCI, NIH, DHHS

Ms. Henderson is the Senior Advisor for Division Resources and Biobanking in the Division of Cancer Epidemiology and Genetics of the U.S. National Cancer Institute, NIH.

She supports large program and contract management, and infrastructure planning for molecular epidemiology.

She is active in the International Society for Biological and Environmental Repositories (ISBER), serving as President 2011-12 and Chair, OAC 2012-2019, Science Policy, and Education and Training CoP.

She has received the ISBER Founders Award and the ISBER Distinguish Leadership and Service Award for her dedication to biobanking globally.

She is E&T Co-Chair of the WHO/IARC-led LMIC Biobank and Cohort Building Network (BCNet); she sits on the editorial board for Biopreservation and Biobanking.

Ms. Henderson is actively involved in large-scale biospecimen process improvements in operations, technology transfer, sustainability and repository automation.

Debra Leiolani Garcia

A Biobanking Operations Expert

Ms. Deb Leiolani Garcia has been working in the field of biobanking for over 25 years. She earned her B.S. in Microbiology from San Francisco State University and an M.P.A. in Public Administration from University of California, Berkeley.

She served as the Operations Director of the NCI funded Central Operations and Data Coordinating Center (CODCC) of the AIDS and Cancer Specimen Resource (ACSR), a multi-site biobanking program which included 5 U.S. academic biorepositories and 1 located in South Africa for 20 years.

She has been an active member of the International Society for Biological and Environmental Repositories (ISBER) since 2000, serving in the president’s group for 3 years and currently serving as one of the co-chairs of the 2026 Shenzhen Global Biobanking Congress; chair of the Rising Stars: Next Generation Biobankers; and co-chair of the Biobank Awareness Task Force and Biobanking 101 and 201 workshops.

Ms. Garcia is also an active member of the Association of Southeast Asian Nations (ASEAN) Biobanking Feasibility Study Advisory Group. The focus of this group is to provide training on biorepository operational management, regulatory and ethical practices, and integration of biobanking best practices focused on the standardization and harmonization of protocols and procedures in the Southeast Asia region.

She is a co-author of 24 peer-reviewed articles and book chapters in biobanking operational and regulatory management.

Core Features of Biobanking LIMS Software

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Study & Research Management

Define and structure research studies within CloudLIMS, and associate each study with its samples, sources, and responsible investigators. Import study records in batch, link specimens to study protocols, and generate custom reports for publication-ready data packages.

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Shipment & Logistics Management

Retrieve samples from any storage location, package them for shipment, and maintain end-to-end chain-of-custody documentation for every shipment sent to clients or collaborators. Real-time shipment tracking ensures accountability at every step of the logistics chain.

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Inventory Management

Track all laboratory consumables — kits, reagents, chemicals, and equipment supplies — used across your biorepository. Associate each inventory item with samples, tests, and custodians, providing full operational visibility and preventing critical supply shortages.

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Services and Billing Management

Manage laboratory services such as sample purchase requests, sample storage requests, and create catalogs with defined pricing for each service offered by your laboratory.

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Test Management

Manage the full test lifecycle — from test assignment through result validation and reporting. Analyze trends across test results, maintain test CoC, track Turnaround Time (TAT), and produce professional custom reports in PDF or Excel format.

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Third-Party Integrations

CloudLIMS connects seamlessly with temperature monitoring systems, such as T-Scan, SmartSense, and Sensaphone, and EHRs such as Epic, eClinicalWorks, and Practice Fusion, through a robust REST API, facilitating data interoperability and eliminating data silos. Laboratory analyzers can transfer test results from XLS/CSV files directly into CloudLIMS, removing the need for manual data entry.

Testimonials From Our Biobanking Customers

CloudLIMS reviews sourced by G2

More Customer Testimonials

Biobanking Resources

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Webinars

Navigating Through ISO 20387 Accreditation Challenges Using a Biospecimen Management Software

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Podcasts

Decarbonization Diaries: Building a Greener Biobanking Future with Biospecimen Tracking and Management Software

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Case Studies

BIRKA BioStorage Streamlines & Automates Highly Complex Sample Management & Biobanking Processes Using CloudLIMS

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Presentations

ISO 20387:2018: Enabling Biobanks Maintain High-Quality, Fit-for-Purpose Samples

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Publications

Integrating AI and Biobank Management LIMS Systems for Ethical, High-Quality Biobanking

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Posters

Fuelling Local Cancer Research by Establishing Biobanking Best Practices for Quality Samples at The University of Texas at El Paso

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eBooks

Integrating AI and Biobank Management LIMS Systems for Ethical, High-Quality Biobanking

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White Papers

The Role of LIMS in Meeting Biobank Regulatory Requirements and Ensuring Operational Quality

Trusted by Leading Biobanks Worldwide

Awards and Recognition

Momentum Leader 2026
Best Estimated ROI 2026
High Performer Small Business 2026
High Performer 2026
Spring-2025
LabInventory Management BestEstimated ROI Small-Business
LIMS HighPerformer HighPerformer
LIMS UsersMost Likely To Recommend Small-Business
LIMS High Performer Small-Business High Performer
G2 Awards CloudLIMS as High Performer Small Business in Fall 2023
G2 Recognizes CloudLIMS as Easiest To Do Business With Small Business in Summer 2023
G2 Recognizes CloudLIMS as Easiest To Do Business With Small Business in Winter 2023
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CloudLIMS has won the SoftwareSuggest Customers Choice Winter 2022 Award
CloudLIMS Capterra Reviews

Frequently Asked Questions About Biobanking LIMS

What is a Biobanking LIMS?

A biobanking LIMS is a laboratory information management system designed specifically to manage biospecimens, associated metadata, patient consent records, and storage workflows while ensuring data security and regulatory compliance. Unlike generic LIMS platforms, a biobanking LIMS includes purpose-built functionality for CoC tracking, biospecimen genealogy, compliance and quality standards support, and PHI protection — addressing the unique operational and regulatory demands that biorepositories face.

How does LIMS software for biobanks improve sample management?

LIMS software for biobanks improves sample management by enabling efficient barcode-based tracking, automating accessioning and storage workflows, and providing real-time inventory visibility. This reduces manual errors, accelerates sample retrieval, and ensures every specimen has a complete, auditable history from collection through final disposal — eliminating the gaps and inconsistencies that plague paper-based and spreadsheet-driven systems.

Is CloudLIMS suitable for biorepositories?

Yes. CloudLIMS is a flexible platform designed to support both for managing human samples and for handling other sample types such as insect, animal, rock and other sample collections. Its configurable modules can be tailored to specific workflows, sample types, regulatory requirements, and scale of each organization.

What are the top features to look for in a biospecimen management system?

Key features to look for in a biospecimen management system include end-to-end sample tracking, barcode-based identification, real-time inventory management, and robust audit trails that support accreditation. Beyond these fundamentals, look for configurable workflows that adapt to your specific protocols, secure role-based access control, advanced search and reporting capabilities, donor consent management, and seamless integration with laboratory instruments and external systems such as EHRs and temperature monitoring systems. For more information, please read this article

Why do biobanks need a dedicated LIMS?

Biobanks need a dedicated LIMS because their operational and regulatory requirements go far beyond what a generic laboratory or inventory management system can support. A purpose-built biobanking LIMS provides the specific functionality, compliance workflows, and audit capabilities that biorepositories require to operate safely, legally, and efficiently at scale.

How does a biobanking LIMS improve operational efficiency?

A biobanking LIMS improves operational efficiency by digitizing and automating sample tracking, standardizing workflows across all biorepository activities, and eliminating manual data entry errors. It provides real-time inventory visibility and enables fast, accurate biospecimen retrieval — allowing biobanks to handle significantly higher sample volumes with greater accuracy, consistency, and compliance confidence.