Overcoming the Top 4 Challenges in Setting Up and Managing Trials with a Clinical Trial Management System

Leverage a Clinical Trial Management System to Overcome Hurdles in Clinical Research

In a clinical trial, the journey from concept to completion is fraught with numerous challenges. According to recent statistics, about 80% of clinical trials experience delays, with patient recruitment being the primary reason. These delays can significantly impact both the timeline and the cost of bringing new treatments or medicines to patients. Moreover, the complexity of regulatory compliance, data management, and resource allocation adds to the burden on researchers and trial managers. This blog post explores the major obstacles encountered in setting up and running clinical trials and offers practical solutions to address them. 

What are the Key Challenges in Setting Up and Managing Clinical Trials, and How Can They Be Overcome?

  1. Regulatory and Compliance Challenges: Navigating the regulatory landscape is one of the most daunting aspects of setting up and managing clinical trials. Regulatory bodies such as the FDA (Food and Drug Administration) in the U.S. and the EMA (European Medicines Agency) in Europe have stringent requirements that must be met to ensure the safety of participants and the efficacy of clinical trials. These regulations cover a wide range of aspects, from trial design and patient safety to data integrity and reporting standards. A common pitfall is the misinterpretation of these guidelines, which can lead to non-compliance, resulting in costly delays and potential fines. To avoid these issues, it is crucial to thoroughly understand and adhere to all relevant regulations. For instance, with the Diverse and Equitable Participation in Clinical Trials (DEPICT) Act, clinical trial sponsors in the U.S. must now comply with the FDA’s race and ethnicity diversity plan to ensure inclusiveness by enrolling underrepresented racial and ethnic populations in the U.S. in trials, adding another layer of complexity to regulatory adherence. The latest guidelines by the European Medicines Agency (EMA) for clinical trials require that ongoing clinical trials in the EU be transitioned to the Clinical Trials Information System (CTIS) by January 30, 2025.

    This system centralizes the submission and assessment process, aiming to improve transparency and efficiency. Furthermore, with the enactment of the new Clinical Trials Regulation (EU) No. 536/2014 (CTR), all clinical trial data must be made publicly accessible unless it falls under specific confidentiality exemptions. This requirement enhances transparency but imposes additional administrative burdens on sponsors to ensure compliance with EU GDPR.

    Furthermore, researchers and trial managers must stay updated with evolving guidelines, continually refining their processes to align with regulatory expectations and ethical standards. Ethical considerations are paramount in clinical research, as they protect the rights and well-being of participants. This includes obtaining informed consent, ensuring patient privacy, and conducting trials in a manner that minimizes risk to participants.

    Tools such as a laboratory information management system (LIMS) or a clinical trial management system ensure that all data collected during a trial is accurately recorded, securely stored, and easily retrievable, meeting the stringent requirements of regulatory bodies like the FDA and EMA. It supports compliance with Good Clinical Practice (GCP), Good Laboratory Practice (GLP), and other regulatory guidelines through audit trails, user access controls, and data encryption.

  2. Patient Recruitment and Retention: Recruiting and retaining patients is one of the most significant challenges in clinical trials. Ensuring diversity in patient populations is crucial for the generalizability of trial results, yet recruiting diverse participants can be difficult due to protocol complexity. The increasing number of procedures, eligibility criteria, and protocol amendments make it challenging to enroll patients. For instance, patients might be deterred by lengthy hospital visits or restrictions on concomitant medications. Effective strategies to overcome recruitment barriers include forming partnerships with patient advocacy groups and employing targeted recruitment campaigns.

    However, recruitment is only half the battle; retaining participants throughout the trial is equally challenging. Significant dropout rates can undermine the reliability of trial outcomes and result in expensive delays. Complex study procedures, frequent protocol visits, and disease-related challenges, such as the physical and emotional toll on patients with conditions like oncology or psychiatry or the death of participants, further complicate retention. To improve retention, clinical trial teams can enhance patient engagement through regular follow-ups, clear communication, and support throughout the trial process. Simple steps to increase retention include planning flexible and convenient appointment times, spending extra time with patients to understand and address their concerns, and providing summaries of laboratory results to demonstrate progress. Additionally, patient compensation services can incentivize participants.

    A clinical trial management system plays a crucial role in supporting participant recruitment. By centralizing and organizing participant data, a clinical trial management system enables researchers to efficiently identify suitable candidates based on specific criteria such as demographics, medical history, and eligibility requirements. Moreover, a clinical trial management system can integrate with other systems like electronic health records (EHRs) to provide a comprehensive view of potential participants, facilitating informed decision-making and ultimately contributing to the success of clinical trials.

  3. Data Management and Data Quality: Handling large volumes of data presents significant challenges. With the increasing complexity of clinical trials, data often comes from disparate, siloed sources, making it difficult for researchers to access comprehensive and meaningful data sets. Moreover, ensuring data integrity and quality is paramount in clinical trials. Common data quality issues include inconsistencies, missing data, and errors in data entry, often exacerbated by manual data handling and duplication of information across forms. For instance, when site visit reports require repetitive information to be re-entered by hand, the risk of introducing errors increases, potentially compromising the accuracy of the data. To maintain data integrity, it is essential to implement best practices such as regular audits, validation checks, and the use of standardized protocols for data handling. Additionally, addressing issues related to data ownership and consent agreements can facilitate better access to valuable data sets, especially in studies involving rare diseases where data is often siloed.

    A LIMS provides a unified platform for storing all trial data, making it easily accessible and reducing the risk of data silos. Furthermore, built-in validation protocols within a LIMS help identify and correct data discrepancies, ensuring high data quality. Effective sample management is another critical area where LIMS excels, offering comprehensive sample tracking and annotation from collection through analysis to disposal. It also facilitates automated data capture directly from laboratory instruments, reducing manual data entry errors and ensuring data integrity. Additionally, audit trails and electronic signatures further enhance reliability.

  4. Financial and Resource Management Challenges: One of the primary financial challenges is budgeting and cost control. Clinical trials often exceed their initial budget due to unforeseen expenses, such as protocol amendments, patient recruitment difficulties, or extended timelines. To manage these financial challenges, it’s essential to create a detailed and realistic budget at the outset, factoring in potential contingencies. Regular financial audits can help monitor expenditures and ensure the trial remains within budget. Additionally, leveraging technology to streamline operations and reduce manual processes can also lead to significant cost savings.

    Resource allocation is another critical aspect of managing clinical trials efficiently. Proper utilization of resources such as personnel, facilities, and equipment is vital to ensure that the trial runs smoothly and effectively. Efficient resource management involves strategic planning and scheduling to avoid bottlenecks and ensure resources are available when needed. For example, allocating personnel based on their expertise and the specific needs of the trial can enhance productivity and reduce downtime.

    A clinical research LIMS ensures that personnel, lab inventory, and equipment are used efficiently, preventing bottlenecks and optimizing trial operations. Features such as staff training management ensure tasks are assigned only to the personnel with the appropriate training, competency, and experience to perform the tasks efficiently. The equipment management feature of a LIMS ensures equipment is maintained and calibrated as per the schedule, increasing productivity and efficiency. The lab inventory management functionality of a LIMS enables optimal management of laboratory supplies, such as test tubes, beakers, and reagents. It sends alerts to lab managers and other stakeholders when the quantity of supplies reaches a threshold level, ensuring timely replenishment and preventing shortages.


Clinical trials often involve numerous challenges ranging from regulatory compliance to data management, patient recruitment, and financial oversight. Each of these hurdles can significantly impact the progress and success of a trial. With the right tools and strategies in place, these obstacles can be effectively addressed. A clinical trial management system enhances regulatory compliance, streamlines patient recruitment and retention, ensures data integrity, and optimizes financial and resource management. Implementing a clinical trial management system early in the trial process can save considerable time, effort, and resources, ultimately leading to more efficient and successful clinical trials.

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